You keep mentioning this box or that box, so it's a little ambiguous. In the end, what the individual boxes say is irrelevant; they are only used to add data to the CheckedListbox on the far left. It's what that says in the end that matters.
I expect you wish it to look like:
You can force an export by right-clicking on an encounter in the TreeView of the Main tab. You can then look in the text file using Notepad or whatever.